It looks like Rabbi Yehuda in the Gemara does not make any distinction in prohibitions that are rabbinical if they are intended or not.
[This subject is part of a large Tosphot in Yoma. I just wanted to bring up one little point that I think is interesting.]

This approach of Rabbi Yehuda seems to be contrary to the way the Rambam understands Rabbinical law.
To the Rambam, the Torah gives permission to the Sanhedrin in Jerusalem (or people with what the Torah considers ordination--not the ordination that is common today) to interpret the law based on the thirteen principles of how to derive laws from verses and also to make a fence around prohibitions. [Also, they had some traditions of what is considered work on Shabat and other oral traditions that they have to hand down.] This we see in the verse in Deuteronomy "you shall listen to all they teach you." [The whole verse says basically when you have cases in Torah Law that come up, and you can't decide, you shall go to the supreme court in Jerusalem and follow all that they teach you. It sounds like it was written specifically to contradict Martin Luther.]

The Rambam makes it clear that it is not up to every individual to decided how to interpret the the law. This is clearly stated in the Torah itself.
But the law to listen to the Sanhedrin is specially a law to not ignore them. And this can't apply to an unintended act. When one forgets the law he is not ignoring anything.

The resolution to this is that the Rambam  in fact decided in a "thing not intended" like R. Shimon and not like R. Yehuda.

I hope it is clear what I am trying to say. We have two arguments between R. Yehuda and R. Shimon.One about work not intended. The other about work done  for a different than purpose the work was done in the tabernacle in the desert. The question here is on R Yehuda. if we understand a rabbinical decree in teh way the Rambam does then how does the opinion of R Yehuda make sense? That is the question I intend to answer in this short essay.